ViralQuest Pipeline Refactor
Python
Bioinformatics
GitHub
The refactor of a bioinformatics pipeline to viral discovery and analysis.
● Active
⎈ GitHub
Overview
The ViralQuest Pipeline already exists and current is in the 2.6.22 version. This project is about the refactoring from zero this pipeline.
Goals:
- Improve the dependencies installation;
- Compatibility with Apple silicon architecture;
- Bug fixes (a lot of them);
- Refactor all the visual interface for the final output.
Methods / Stack
| Component | Tool |
|---|---|
| Language | Python>=3.12 |
| Environment | pixi & pip |
| Databases | Zenodo & Google Drive |
Results
The ongoing project it is in the “total-refactor” branch in the github repo. The idea is to trasnfer the current version to a legacy branch and the refactor one to the main.
I will write here later all the aspects of the refactor.